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LiuzLab / AI_MARRVEL

AI-MARRVEL (AIM) is an AI system for rare genetic disorder diagnosis
GNU General Public License v3.0
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gene_clinvar.csv file wrong version used for hg38 #98

Open SpicyChicken6 opened 3 weeks ago

SpicyChicken6 commented 3 weeks ago

Describe the bug Currently hg19 version gene_clinvar.csv is used for both hg38 (wrong) and hg19 conditions

Expected behavior Different versions of genomes use corresponding version of gene_clinvar.csv

Input data gene_clinvar.csv is a data dependency file with both hg19 and hg38 versions. It is used in bin/feature.py based on genome version differently.

Genome build hg19 hg38

Screenshots or pipeline output image

Additional context Need a quick fix.