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LiuzLab / TraceQC

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Sharing example dataset #5

Closed hyunhwan-jeong closed 4 years ago

hyunhwan-jeong commented 4 years ago

@JasperYH can you share an example FASTQ file with Rami and me?

hyunhwan-jeong commented 4 years ago

I found f155459 has small example data, and I am checking whether a vignette vignettes/tutorial.Rmd is working on the example files.

But, to test the scalability test, we would need to test your tool on a normal size dataset. Can you share them?

hyunhwan-jeong commented 4 years ago

@JasperYH, where did you get Church's data, which you used to create example.fastq?

hyunhwan-jeong commented 4 years ago

After today's discussion, I could locate where the data comes from. This is the paper of the data source: https://www.nature.com/articles/nmeth.4108

Also in the FASTQ files, I can find SRA IDs for each FASTQ file, so I think I have gotten the information.