Hi Liza，
Thanks for your amazing tool!
I met some errors while using lhc_mr. I have written the --ntasks-per-node=8 in my own sh file,but the error still came out. And then I tried to add it in submit.sh, it seemed don't work.
The details of the errors are listed below,please advise.
TwoSampleMR version 0.5.7
[>] New: Option to use non-European LD reference panels for clumping etc
[>] Some studies temporarily quarantined to verify effect allele
[>] See news(package='TwoSampleMR') and https://gwas.mrcieu.ac.uk for further details
sbatch: error: Please add --ntasks-per-node or --exclusive option for your multi-process jobs.
sbatch: error: Batch job submission failed: Unspecified error
Error in strsplit(sys_out, " ")[[1]] : subscript out of bounds
Calls: lhc_mr -> slurm_apply -> submit_slurm_job
In addition: Warning message:
In system("sbatch submit.sh", intern = TRUE) :
running command 'sbatch submit.sh' had status 1
Execution halted
Hi Liza， Thanks for your amazing tool! I met some errors while using lhc_mr. I have written the --ntasks-per-node=8 in my own sh file,but the error still came out. And then I tried to add it in submit.sh, it seemed don't work.
The details of the errors are listed below,please advise.
TwoSampleMR version 0.5.7 [>] New: Option to use non-European LD reference panels for clumping etc [>] Some studies temporarily quarantined to verify effect allele [>] See news(package='TwoSampleMR') and https://gwas.mrcieu.ac.uk for further details
sbatch: error: Please add --ntasks-per-node or --exclusive option for your multi-process jobs. sbatch: error: Batch job submission failed: Unspecified error
Error in strsplit(sys_out, " ")[[1]] : subscript out of bounds Calls: lhc_mr -> slurm_apply -> submit_slurm_job In addition: Warning message: In system("sbatch submit.sh", intern = TRUE) : running command 'sbatch submit.sh' had status 1 Execution halted