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LoLab-MSM / pysb

Python framework for Systems Biology modeling [Lopez Lab Mods]
BSD 2-Clause "Simplified" License
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test_tropical.py fails with the current version of the tropical code #2

Closed lh64 closed 9 years ago

lh64 commented 9 years ago

Console output:

Solving Simulation Getting slaved species Constructing Graph Computing Cycles Computing Conservation laws Pruning Equations Solving pruned equations Traceback (most recent call last): File "/Users/lopezlab/git/pysb/pysb/tests/test_tropical.py", line 11, in tropical.tropicalize(t, ignore=1, epsilon=0.1, rho=1, verbose=True) File "/Users/lopezlab/git/pysb/pysb/tools/tropicalize.py", line 57, in tropicalize self.sol_pruned = self.solve_pruned() File "/Users/lopezlab/git/pysb/pysb/tools/tropicalize.py", line 215, in solve_pruned self.sol_pruned = { j:sol[0][i] for i, j in enumerate(solve_for) } File "/Users/lopezlab/git/pysb/pysb/tools/tropicalize.py", line 215, in self.sol_pruned = { j:sol[0][i] for i, j in enumerate(solve_for) } KeyError: 0

alubbock commented 9 years ago

Fixed by @lh64 in 97223e1d7b79b6508418b07cd11f350759ea7483