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LoLab-MSM / pysb

Python framework for Systems Biology modeling [Lopez Lab Mods]
BSD 2-Clause "Simplified" License
6 stars 8 forks source link

Cytoscapejs #45

Closed ortega2247 closed 5 years ago

ortega2247 commented 6 years ago

This is a jupyter notebook widget to visualize models using cytoscapejs. It allows users to see a static view of the model where the nodes are the species and the edges are the interactions between species (reactions). Additionally, there is a dynamic view of the model where the nodes have temporal information about relative concentration (species concentration is normalized to the maximum attained in the simulation) and edges have information about percentage of the flux going through a specific reaction. Additionally, by clicking in nodes or edges it is possible to obtain information about absolute concentration and reaction rates.

coveralls commented 6 years ago

Coverage Status

Coverage increased (+0.3%) to 76.105% when pulling 2771eb5b25890e0cbf9fe5a10c95b2d80a554f89 on cytoscapejs into 011b713d2a71e1f99019335fac074a6a62899634 on master.

coveralls commented 6 years ago

Coverage Status

Coverage increased (+0.3%) to 76.105% when pulling 2771eb5b25890e0cbf9fe5a10c95b2d80a554f89 on cytoscapejs into 011b713d2a71e1f99019335fac074a6a62899634 on master.