Creation of SampleSource class (really an interface) from which FileSource and DataSuperSource will inherit. This is for troubleshooting the actual upload process.
Moving responsibility around between CLI commands and Uploader. This is to make it clearer what is happening with the automatic Sample and SampleGroup creation.
Then troubleshooting upload against latest backend API.
Small refactor into more distinct modules:
SampleSourceclass (really an interface) from whichFileSourceandDataSuperSourcewill inherit. This is for troubleshooting the actual upload process.Uploader. This is to make it clearer what is happening with the automaticSampleandSampleGroupcreation.Then troubleshooting upload against latest backend API.