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Longo-Lab / de_dashboards

https://longo-lab.github.io/
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dynamic app.R drop down menu #9

Closed rbutleriii closed 6 months ago

rbutleriii commented 1 year ago

Related to #8 , it would be good if the app.R script had a dynamic drop down menu that only showed the valid typeouts that won't generate an error. This one will be more challenging.

cyouh95 commented 1 year ago

Looks like the current error in the PS19_C31_snRNAseq dashboard is due to wrong typeouts specified in its deploy.R, causing the needed files not to be pushed. Specifically, ` &/were not properly replaced by_&-`. This should now be fixed by #8.

If we further want to make sure the drop down menu only shows cell types that have saved dashboard files, maybe we can filter projs in app.R:

typeouts <- list.files(pattern = '\\.dashboard_files\\.rdata', recursive = T) %>%
  str_extract('[^/]+')

lapply(projs, function(x) x[x %in% typeouts])
rbutleriii commented 6 months ago

Yeah, reviewing the process to deploy, the choice of subclasses to run for the differential expression script is hard coded into 00-commands.sh, so there is probably not an easy way to automate which subclasses will be pulled in. Going to close this one as a wontfix. We can come back to it at some point, but too few resources.