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LooseLab / ROBIN

A package to run real time analysis of nanopore methylation data.
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Missing NanoDX and PanNanoDX classifications in PDF report #70

Closed mwhamgenomics closed 1 week ago

mwhamgenomics commented 1 week ago

When I run 'Generate Report' on the live page to generate a PDF, the 'NanoDX' and 'PanNanoDX' entries that are expected to appear at the top of the page are missing - see screenshot.

Screenshot 2024-11-13 at 17 13 23

This happens because the CSV files created in the output folder are called NanoDX_scores.csv and PanNanoDX_scores.csv, but the PDF generation process looks for files named nanoDX_scores.csv and pannanodx_scores.csv. If I try updating these names to match what's generated, the two missing classifications now appear again.

mattloose commented 1 week ago

Would you be able to check out the branch issues/issue70 and see if this resolves the pdf generation process for you? I've made this fix backwards compatible. If it resolves it I will merge into the main branch.

mwhamgenomics commented 1 week ago

Thanks, I can confirm that this fixes it! I'm also getting the 'classifications over time' plots now, which I wasn't before. This is now resolved.

mattloose commented 1 week ago

Brilliant. Thank you for confirming. I will merge this into the main branch.