Reads not treated by adaptive sampling

LooseLab / readfish

CLI tool for flexible and fast adaptive sampling on ONT sequencers

https://looselab.github.io/readfish/

GNU General Public License v3.0

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Reads not treated by adaptive sampling #197

Closed lborcard closed 2 years ago

lborcard commented 2 years ago

Dear All,

We are currently using adaptive sampling (enrichment protocol) on on minknow. We discovered that a portion of the read ( fastq_pass) are not part of the output report of the adaptive sampling (csv file) ? Does anyone know if it is a normal behaviour and could anyone provide an explanation as to why we observe that?

GridION minKNOW 21.11.7

best regards

xvazquezc commented 2 years ago

It might be the same issue we are having with the standard adaptive. Check the ONT community post and comments if that's the same kind of thing https://community.nanoporetech.com/posts/logging-of-reads-in-adapti

mattloose commented 2 years ago

Hi,

As you are not using readfish we are unable to provide support for you.

As suggested you should check the ont community.

Thanks.