LooseLab / readfish

CLI tool for flexible and fast adaptive sampling on ONT sequencers
https://looselab.github.io/readfish/
GNU General Public License v3.0
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update example readfish toml file? #252

Closed danchurch closed 11 months ago

danchurch commented 11 months ago

Hello LooseLab,

Thanks again for the awesome software. I just wanted to ask, is the example readfish toml file a little out of date? To make it work, I had to change line 3, with my own setup, I had to change the host from the localhost ip address to the socket/pipe/whatever-it-is created for guppy server/client. As in:

host = "127.0.0.1

to

host= "ipc:///tmp/.guppy/

If this is a generalizable issue, perhaps the example toml file in this repo should be updated?

Adoni5 commented 11 months ago

Hi @danchurch - Good spot! We are on the cusp of releasing an updated and consolidated version of readfish, with all shiny updated documentation and examples. But in the mean time I will update the example toml file in dev_staging!

Adoni5 commented 11 months ago

Updated in 0ad7a88062c541bc589b14e0dc4f599ab9605544