Fix changing directory after 60 seconds if no run folder

LooseLab / readfish

CLI tool for flexible and fast adaptive sampling on ONT sequencers

https://looselab.github.io/readfish/

GNU General Public License v3.0

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Fix changing directory after 60 seconds if no run folder #323

Closed Adoni5 closed 6 months ago

Adoni5 commented 6 months ago

Excepts the File Not Found Error if the run folder doesn't appear after 60 seconds - and sets the output directory to the current working directory.

mattloose commented 6 months ago

Do we want to do this or do we want to allow it to run for longer before erroring?

I'm not sure on the best course of action. We don't want to wait for ever of course - but a run can easily take two minutes or more to start?

mattloose commented 6 months ago

Ok. It's not ideal but this solves the icarust issue. I suggest a revisit in the early new year. We've increased it to 120 as this is the typical warm up time for a run observed over the last few months.