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LooseLab / readfish

CLI tool for flexible and fast adaptive sampling on ONT sequencers
https://looselab.github.io/readfish/
GNU General Public License v3.0
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Example barcode balancing #333

Closed ahfitzpa closed 1 month ago

ahfitzpa commented 5 months ago

Hi,

We are interested in using the barcode balancing feature in amplicon ONT workflows. It is not clear to me in the documentation whether or not the barcode balancing with readfish requires an input file as it is a form of adaptive sampling.

If an input file (fasta, mmi) is required, what should it contain?

1) Barcode sequences 2) Barcode + amplicon sequences

Thank you for the clarification.

Amy

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github-actions[bot] commented 4 months ago

This issue is stale because it has been open 30 days with no activity. Remove stale label or comment or this will be closed in 5 days.

github-actions[bot] commented 3 months ago

This issue was closed because there has been no response for 5 days after becoming stale.

mattloose commented 3 months ago

Reopening as need to address this.

github-actions[bot] commented 2 months ago

This issue is stale because it has been open 30 days with no activity. Remove stale label or comment or this will be closed in 5 days.

github-actions[bot] commented 1 month ago

This issue is stale because it has been open 30 days with no activity. Remove stale label or comment or this will be closed in 5 days.

github-actions[bot] commented 1 month ago

This issue was closed because there has been no response for 5 days after becoming stale.