direct use my sequences of ASV to align to the MBPD reference database using UCLUST algorithm

LorMeBioAI / MBPD

15 stars 8 forks source link

direct use my sequences of ASV to align to the MBPD reference database using UCLUST algorithm #3

Open Johnny-zuo opened 1 year ago

Johnny-zuo commented 1 year ago

I have done my ASV. I want to directly align my sequences to the MBPD reference database using UCLUST algorithm. How can I do this? Or how can I get access to the MBPD reference database?

LorMeBioAI commented 1 year ago

Hi, You can finish this task by the command assign_taxonomy.py, which need to install the QIIME1. You can find this command in the file of MBPD.py, and you can download the MBPD database in the db file of this github.

Best wishes