First, on both the 3DS and mobile stage listings, main stage #485 Burmy is listed as being a Grass-type stage. It's actually a Bug-type stage.
Second, on the mobile stage listings, main stage #500 is labeled "Mega_(Metagross)" as if it was for a Pokemon called Mega with a form called Metagross. It should be labeled "Mega_Metagross" like in the 3DS stage listings.
Third, in the 3DS stage listings, the special stage for Breloom is listed before the special stage for Leavanny. It should be the other way around, since Leavanny is #613 and Breloom is #615. The mobile stage listings do not have this issue.
There are some minor changes needed in the configs for issues pointed out by reddit users: u/NorthernFireDrake and u/Anon911sam.
From NorthernFireDrake: https://www.reddit.com/r/ShuffleMove/comments/6m7ekr/shuffle_move_v03109/dk9vpk0/
From Anon911sam: https://www.reddit.com/user/Anon911sam