Closed yangsunhwang closed 1 year ago
I am getting an error following. Thank you!
Checking associated file /stelmo/kyu/L5/raw/20230403/20230403_L5_01_r1.stateScriptLog Checking associated file /stelmo/kyu/L5/raw/20230403/20230403_L5_02_r2.stateScriptLog --------------------------------------------------------------------------- IndexError Traceback (most recent call last) ~/source/rec_to_nwb/rec_to_nwb/processing/builder/originators/position_originator.py in make(self, nwb_content) 53 position_df = self.get_position_with_corrected_timestamps( ---> 54 position_tracking_path[0] 55 ) ~/source/rec_to_nwb/rec_to_nwb/processing/builder/originators/position_originator.py in get_position_with_corrected_timestamps(position_tracking_path) 137 # half second pause at the start to allow for alignment. --> 138 pause_mid_time = find_acquisition_timing_pause(dio_systime) 139 ~/source/rec_to_nwb/rec_to_nwb/processing/builder/originators/position_originator.py in find_acquisition_timing_pause(timestamps, min_duration, max_duration, n_search) 391 ) --> 392 pause_start_ind = np.nonzero(is_valid_gap)[0][0] 393 pause_end_ind = pause_start_ind + 1 IndexError: index 0 is out of bounds for axis 0 with size 0 During handling of the above exception, another exception occurred: IndexError Traceback (most recent call last) <timed exec> in <module> ~/source/rec_to_nwb/rec_to_nwb/processing/builder/raw_to_nwb_builder.py in build_nwb(self, run_preprocessing, process_mda_valid_time, process_mda_invalid_time, process_pos_valid_time, process_pos_invalid_time) 230 process_mda_invalid_time=process_mda_invalid_time, 231 process_pos_valid_time=process_pos_valid_time, --> 232 process_pos_invalid_time=process_pos_invalid_time) 233 234 logger.info('Done...\n') ~/source/rec_to_nwb/rec_to_nwb/processing/builder/raw_to_nwb_builder.py in __build_nwb_file(self, process_mda_valid_time, process_mda_invalid_time, process_pos_valid_time, process_pos_invalid_time) 245 logger.info('Date: {}'.format(date)) 246 nwb_builder = self.get_nwb_builder(date) --> 247 content = nwb_builder.build() 248 nwb_builder.write(content) 249 if self.is_old_dataset: ~/source/rec_to_nwb/rec_to_nwb/processing/builder/nwb_file_builder.py in build(self) 369 self.associated_files_originator.make(nwb_content) 370 --> 371 self.position_originator.make(nwb_content) 372 373 valid_map_dict = self.__build_corrupted_data_manager() ~/source/rec_to_nwb/rec_to_nwb/processing/tools/beartype/beartype.py in func_beartyped(__beartype_func, *args, **kwargs) ~/source/rec_to_nwb/rec_to_nwb/processing/builder/originators/position_originator.py in make(self, nwb_content) 68 ) 69 video_df = self.get_corrected_timestamps_without_position( ---> 70 video_file_path[0] 71 ) 72 position.create_spatial_series( ~/source/rec_to_nwb/rec_to_nwb/processing/builder/originators/position_originator.py in get_corrected_timestamps_without_position(hw_frame_count_path) 255 # The DIOs and camera frames are initially unaligned. There is a 256 # half second pause at the start to allow for alignment. --> 257 pause_mid_time = find_acquisition_timing_pause(dio_systime) 258 259 if ptp_enabled: ~/source/rec_to_nwb/rec_to_nwb/processing/builder/originators/position_originator.py in find_acquisition_timing_pause(timestamps, min_duration, max_duration, n_search) 390 timestamp_difference < max_duration 391 ) --> 392 pause_start_ind = np.nonzero(is_valid_gap)[0][0] 393 pause_end_ind = pause_start_ind + 1 394 pause_mid_time = ( IndexError: index 0 is out of bounds for axis 0 with size 0
I am getting an error following. Thank you!