LorenFrankLab / spyglass

Neuroscience data analysis framework for reproducible research built by Loren Frank Lab at UCSF
https://lorenfranklab.github.io/spyglass/
MIT License
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figurl-sortingview does not load/slow in loading #1079

Open shijiegu opened 3 months ago

shijiegu commented 3 months ago

Describe the bug figurl-sortingview does not load/slow in loading for newly inserted data but did load old links.

ss_key = {"nwb_file_name": nwb_copy_file_name,"sorter":"mountainsort4",
"sort_interval_name":"02_Seq2Session1","sort_group_id":0}
ss_key['curation_id'] = 1
print((sgs.CurationFigurl & ss_key).fetch("url")[0])

Using the resulting link, https://figurl.org/f?v=npm://@fi-sci/figurl-sortingview@12/dist&d=sha1://94c813b29e7f489b475b08aa2c7c885efa01a8e6&s= the view does not seem to load. It shows "waiting for data" forever.

On the contrary, old curations that I inserted last year loads instantly.

ss_key['curation_id'] = 0 # made in 2023
print((sgs.CurationFigurl & ss_key).fetch("url")[0])

https://figurl.org/f?v=gs://figurl/spikesortingview-10&d=sha1://acc66a9b2ebd4d030d785b0a9077feff0e1aa2a0&s=

I followed the tutorial notebook in inserting to sgs.CurationFigurl:

starting_curations = (sgs.Curation() & ss_key).fetch("KEY")  # you could also select any key from the sgs.Curation table here

username = "shijiegu"
fig_url_repo = f"gh://LorenFrankLab/sorting-curations/main/{username}/"  # settings for franklab members

sort_interval_name = ss_key["sort_interval_name"]
gh_url = (
    fig_url_repo
    + str(nwb_file_name + "_" + sort_interval_name)  # session id
    + "/{}"  # tetrode using auto_id['sort_group_id']
    + "/curation.json"
)  # url where the curation is stored

for auto_id in starting_curations:
    auto_curation_out_key = dict(
        **(sgs.Curation() & auto_id).fetch1("KEY"),
        new_curation_uri=gh_url.format(str(auto_id["sort_group_id"])),
    )
    sgs.CurationFigurlSelection.insert1(
        auto_curation_out_key, skip_duplicates=True
    )
    sgs.CurationFigurl.populate(auto_curation_out_key)

To Reproduce Steps to reproduce the behavior:

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samuelbray32 commented 3 months ago

Just an easy check that's happened to me before: Are you sure you have the full link? The use of some characters in the figurl link causes some renderes to parse the string into a partial, incorrect hyperlink. If you click on the hyperlink generated or use copy_link you can be aiming at the wrong url address

samuelbray32 commented 2 months ago

@shijiegu was this resolved?