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LosicLab / starchip

Detection of Circular RNA and Fusions from RNA-Seq
http://starchimp.readthedocs.io/en/latest/
MIT License
32 stars 11 forks source link

another trouble #14

Closed ChrisLou-bioinfo closed 6 years ago

ChrisLou-bioinfo commented 6 years ago

Error: requested chromosome 0 does not exist in the genome file /root/files/circular_ref/gencode.v28.primary_assembly.annotation.gtf.exons.genome. Exiting. Use of uninitialized value $p2Info in split at /root/files/starchip/scripts/circles/summarize_geneinfo.pl line 12, <> line 1. Use of uninitialized value in string eq at /root/files/starchip/scripts/circles/summarize_geneinfo.pl line 20, <> line 1. Use of uninitialized value in string eq at /root/files/starchip/scripts/circles/summarize_geneinfo.pl line 20, <> line 1. Use of uninitialized value $p1Distance in string eq at /root/files/starchip/scripts/circles/summarize_geneinfo.pl line 24, <> line 1. Use of uninitialized value $p1Distance in string eq at /root/files/starchip/scripts/circles/summarize_geneinfo.pl line 24, <> line 1. Use of uninitialized value $p1Distance in numeric eq (==) at /root/files/starchip/scripts/circles/summarize_geneinfo.pl line 27, <> line 1. Use of uninitialized value $p2Distance in numeric eq (==) at /root/files/starchip/scripts/circles/summarize_geneinfo.pl line 27, <> line 1.

kippakers commented 6 years ago

All of your issues should be solved in v1.3c, thanks!