Error: requested chromosome 0 does not exist in the genome file /root/files/circular_ref/gencode.v28.primary_assembly.annotation.gtf.exons.genome. Exiting.
Use of uninitialized value $p2Info in split at /root/files/starchip/scripts/circles/summarize_geneinfo.pl line 12, <> line 1.
Use of uninitialized value in string eq at /root/files/starchip/scripts/circles/summarize_geneinfo.pl line 20, <> line 1.
Use of uninitialized value in string eq at /root/files/starchip/scripts/circles/summarize_geneinfo.pl line 20, <> line 1.
Use of uninitialized value $p1Distance in string eq at /root/files/starchip/scripts/circles/summarize_geneinfo.pl line 24, <> line 1.
Use of uninitialized value $p1Distance in string eq at /root/files/starchip/scripts/circles/summarize_geneinfo.pl line 24, <> line 1.
Use of uninitialized value $p1Distance in numeric eq (==) at /root/files/starchip/scripts/circles/summarize_geneinfo.pl line 27, <> line 1.
Use of uninitialized value $p2Distance in numeric eq (==) at /root/files/starchip/scripts/circles/summarize_geneinfo.pl line 27, <> line 1.
Error: requested chromosome 0 does not exist in the genome file /root/files/circular_ref/gencode.v28.primary_assembly.annotation.gtf.exons.genome. Exiting. Use of uninitialized value $p2Info in split at /root/files/starchip/scripts/circles/summarize_geneinfo.pl line 12, <> line 1. Use of uninitialized value in string eq at /root/files/starchip/scripts/circles/summarize_geneinfo.pl line 20, <> line 1. Use of uninitialized value in string eq at /root/files/starchip/scripts/circles/summarize_geneinfo.pl line 20, <> line 1. Use of uninitialized value $p1Distance in string eq at /root/files/starchip/scripts/circles/summarize_geneinfo.pl line 24, <> line 1. Use of uninitialized value $p1Distance in string eq at /root/files/starchip/scripts/circles/summarize_geneinfo.pl line 24, <> line 1. Use of uninitialized value $p1Distance in numeric eq (==) at /root/files/starchip/scripts/circles/summarize_geneinfo.pl line 27, <> line 1. Use of uninitialized value $p2Distance in numeric eq (==) at /root/files/starchip/scripts/circles/summarize_geneinfo.pl line 27, <> line 1.