Open shimw6828 opened 5 years ago
Hi, yes, you will need the chromosome identifiers to be the same, either both with "chr1" or both "1". Other than that, so long as the build is the same (eg. Hg38) it will be just fine.
Hi, yes, you will need the chromosome identifiers to be the same, either both with "chr1" or both "1". Other than that, so long as the build is the same (eg. Hg38) it will be just fine.
Thanks, I have another question。 Should the file in reference be modified?
I built my star index with the gtf file from ensembl, but I found the repeatbed file was obtained from ucsc. So I don't know if they are compatible in starchip. Do I need to make some changes to repeatbed file? such as chr1 -> 1