I really appreciate the tool
But I got this error while I tried to get the fusion transcripts.
I ran STAR2.7.0f on the data. I have no idea what's going on here.
Checked:Chimeric.out.junction is not an empty file.
1 STARChip v1.3d
2 your final outputs will be in starchip.output.3.summary and starchip.output.3.summary.annotated
3 /home/data/ssy042/STARChip/starchip-1.3e/scripts/fusions/fusions-from-star.pl starchip.output.3 ../Chimeric.out.junction ./hg38_0214.param
4 Use of uninitialized value $fusionname in hash element at /home/data/ssy042/STARChip/starchip-1.3e/scripts/fusions/fusions-from-star.pl line 433, <JUNCTION> line 1.
5 Use of uninitialized value within @_ in array element at /home/data/ssy042/STARChip/starchip-1.3e/scripts/fusions/fusions-from-star.pl line 433, <JUNCTION> line 1.
6 Use of uninitialized value $fusionname in hash element at /home/data/ssy042/STARChip/starchip-1.3e/scripts/fusions/fusions-from-star.pl line 450, <JUNCTION> line 1.
7 Use of uninitialized value $fusionname in hash element at /home/data/ssy042/STARChip/starchip-1.3e/scripts/fusions/fusions-from-star.pl line 450, <JUNCTION> line 1.
I really appreciate the tool But I got this error while I tried to get the fusion transcripts. I ran STAR2.7.0f on the data. I have no idea what's going on here. Checked:Chimeric.out.junction is not an empty file.