The main function of fusions is to filter out FP fusions based on reads. But the proper threshold is fully dependent on the read depth of the sample. starchimp should know this and take it into account. Something like:
Read Log.final.out, gather #uniquely mapped reads
Create cutoffs from this value.
The main function of fusions is to filter out FP fusions based on reads. But the proper threshold is fully dependent on the read depth of the sample. starchimp should know this and take it into account. Something like:
Read Log.final.out, gather #uniquely mapped reads Create cutoffs from this value.