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LosicLab / starchip

Detection of Circular RNA and Fusions from RNA-Seq
http://starchimp.readthedocs.io/en/latest/
MIT License
32 stars 11 forks source link

Speed up count matrix generation #5

Closed kippakers closed 7 years ago

kippakers commented 8 years ago

My current implementation is super slow and scales poorly. It's taking 40+ hours to create a matrix for ~1000 samples and ~4500 cRNA. Need to come up with a solution that utilizes multiple processors at least.