Bedtools 2.26.0 Compatibility Issues

LosicLab / starchip

Detection of Circular RNA and Fusions from RNA-Seq

http://starchimp.readthedocs.io/en/latest/

MIT License

32 stars 11 forks source link

Closed dmaloneynygc closed 6 years ago

dmaloneynygc commented 6 years ago

Doesn't seem the call to closest in cRNA_coordinates2genes.sh line 10 is 2.26.0 compatible.

Receive this -- Error: Type checker found wrong number of fields while tokenizing data line.

Works for version 2.25.0.

kippakers commented 6 years ago

Thanks for the report! I've patched the issue, it should work with bedtools 2.26+ now.