search

Louis-MG / Metadbgwas

Beginig of the expansion of DBGWAS to a metagenomic scale.
Other
0 stars 0 forks source link

Bifrost not built #30

Open JacobPFrick opened 3 months ago

JacobPFrick commented 3 months ago

It does not look like Bifrost gets built along with the other programs, at least not in my build.

Metadbgwas/metadbgwas.sh: line 334: /home/user/Metadbgwas/bifrost/build/src/Bifrost: No such file or directory Metadbgwas/metadbgwas.sh: line 336: /home/user/Metadbgwas/bifrost/build/src/Bifrost: No such file or directory

I double checked and the src directory and program file are not made in the build directory. I would appreciate any help you could provide!

Louis-MG commented 3 months ago

Hello ! How did you install the pipeline ?

Also, this is a work i did during an internship, and I sadly did not have the time to solve a problem that happens around the visualisation step. So this work is not published, peer-reviewed in any way. I appreciate the attention though. I may offer an alternative, when all the publication process is finished. What are you working on ?

JacobPFrick commented 3 months ago

Hello, Thank you for responding! I installed the pipeline using the git clone then sh instructions on your github. My build is an Ubuntu system using Windows Subsystem for Linux. I was interested in using this pipeline because the pipeline it was based off of (DBGWAS Jaillard et al, 2018) had a dependency issue that I couldn’t figure out on my system. I was hoping that I could just drop in your build and circumvent that issue. I have since gotten DBGWAS to run successfully, although I never figured out how to get Metadbgwas to build bifrost. Best, Jacob

From: Louis-Mael Gueguen @.> Sent: Monday, June 17, 2024 6:26 AM To: Louis-MG/Metadbgwas @.> Cc: Jacob P Frick @.>; Author @.> Subject: Re: [Louis-MG/Metadbgwas] Bifrost not built (Issue #30)

Hello ! How did you install the pipeline ?

Also, this is a work i did during an internship, and I sadly did not have the time to solve a problem that happens around the visualisation step. So this work is not published, peer-reviewed in any way. I appreciate the attention though. I may offer an alternative, when all the publication process is finished. What are you working on ?

— Reply to this email directly, view it on GitHubhttps://urldefense.com/v3/__https:/github.com/Louis-MG/Metadbgwas/issues/30*issuecomment-2173393008__;Iw!!K-Hz7m0Vt54!iBbMq3sGvGwy8gfBjMnkACVUIambKTnR0LmwGyWWvvi3CusEdfWBsCoORuJpVOa587ABdQukklkx1Qd7SvO2Goo1$, or unsubscribehttps://urldefense.com/v3/__https:/github.com/notifications/unsubscribe-auth/ATINHM2LTLMXXFPQOOI656DZH3PU7AVCNFSM6AAAAABJCUVXCSVHI2DSMVQWIX3LMV43OSLTON2WKQ3PNVWWK3TUHMZDCNZTGM4TGMBQHA__;!!K-Hz7m0Vt54!iBbMq3sGvGwy8gfBjMnkACVUIambKTnR0LmwGyWWvvi3CusEdfWBsCoORuJpVOa587ABdQukklkx1Qd7SpbPFL3k$. You are receiving this because you authored the thread.Message ID: @.**@.>>

Louis-MG commented 3 months ago

If you didnt build bifrost you should have an error message when trying. Have you used the flag --recursive while cloning the repository ?