Cannot install with python 3.8, need python >=3.9

LouisFaure / scFates

a scalable python suite for tree inference and advanced pseudotime analysis from scRNAseq data.

https://scfates.readthedocs.io/

BSD 3-Clause "New" or "Revised" License

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Cannot install with python 3.8, need python >=3.9 #28

Closed quantumdot closed 7 months ago

quantumdot commented 7 months ago

Following the install instructions in the documentation, I was unable to install everything with a python3.8 environment due to the jax dependency (failure to solve environment). However, creating the virtual environment with python 3.9 allowed me to install all packages and dependencies.

conda create -n scFates -c conda-forge -c r python=3.9 r-mgcv rpy2 -y

It would be good to update the documentation to reflect this.

LouisFaure commented 7 months ago

Now fixed with v1.0.7, tested and working on more recent python version 3.11