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LouisFaure / scFates

a scalable python suite for tree inference and advanced pseudotime analysis from scRNAseq data.
https://scfates.readthedocs.io/
BSD 3-Clause "New" or "Revised" License
49 stars 1 forks source link

Fitting & clustering significant features color_exp #34

Open pmarzano97 opened 3 months ago

pmarzano97 commented 3 months ago

Hello world! I've starting applying the scFates algorithm to my analysis.

I would like to know if it is possibile to change the color of cells in the function of Fitting & clustering significant features (_scf.pl.singletrend) according to the Leiden cluster or based on the pseudotime color (so not just a single color). In the function there is the _colorexp option but it does not allow me to assigne to the cells a color code of an observation in adata.obs. Is it possible to do so?

Thanks so much!!