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LouisFaure / scFates_notebooks

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problem with importing mgcv #1

Open elmir-ma opened 1 month ago

elmir-ma commented 1 month ago

Hi, I was trying to run test_association analysis and I encountered following problem: Exception: R package "mgcv" is necessary for testing feature association to the tree Please install it and try again

I have mgcv installed in the environment

ls ~/miniconda3/envs/scFates/lib/R/library

base datasets grDevices lattice methods nlme splines stats4 tools utils compiler graphics grid Matrix mgcv parallel stats tcltk translations

have I done something wrong? Thank you

LouisFaure commented 1 month ago

Hi, do you set R_HOME before importing scFates? Can you import mgcv in rpy2?