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Luke-ebbis
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complex-prediction
Complex prediction using combfold
Apache License 2.0
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Make the `mmseqs` database local, so that you don't hit rate limits.
#32
Luke-ebbis
opened
3 months ago
0
Publish the pipeline in some way.
#31
Luke-ebbis
opened
3 months ago
0
ROADMAP
#30
Luke-ebbis
opened
3 months ago
0
Find a way to make resource request based on the length of the fasta file
#29
Luke-ebbis
opened
3 months ago
1
Add schemas
#28
Luke-ebbis
opened
3 months ago
0
Make the snakemake pipeline importable
#27
Luke-ebbis
opened
3 months ago
0
Dev slurm
#26
Luke-ebbis
closed
3 months ago
0
Support CIF output
#25
Luke-ebbis
opened
3 months ago
0
Try to relax the produced model
#24
Luke-ebbis
opened
3 months ago
0
Add crosslink support
#23
Luke-ebbis
opened
4 months ago
0
Download colabfold with conda fully
#22
Luke-ebbis
closed
3 months ago
0
Make sure to pool structure names
#21
Luke-ebbis
opened
4 months ago
0
Make sure to dump to logs when a rule fails
#20
Luke-ebbis
closed
3 months ago
1
Higher order pair prediction optional
#19
Luke-ebbis
closed
3 months ago
0
Dev
#18
Luke-ebbis
closed
5 months ago
0
Dev 12 reproduce colabfold paper results scatter gather
#17
Luke-ebbis
closed
5 months ago
0
Dev
#16
Luke-ebbis
closed
5 months ago
0
Make the jobfile print the log in the correct place
#15
Luke-ebbis
closed
5 months ago
0
Find a way for paralel processing
#14
Luke-ebbis
closed
5 months ago
3
Find a way to pool the Colabfold steps
#13
Luke-ebbis
closed
5 months ago
1
Reproduce colabfold paper results
#12
Luke-ebbis
opened
5 months ago
3
Allow for cuda paralelism
#11
Luke-ebbis
closed
5 months ago
1
Increase the number of Colabfold features in the rules
#10
Luke-ebbis
opened
5 months ago
0
Dev 7 prepare for running on cluser
#9
Luke-ebbis
closed
5 months ago
0
Dev 7 prepare for running on cluser
#8
Luke-ebbis
closed
5 months ago
0
Prepare for running on cluser
#7
Luke-ebbis
closed
3 months ago
0
issue calculon2
#6
Luke-ebbis
closed
3 months ago
1
pre-compute msas
#5
Luke-ebbis
closed
5 months ago
1
Colab fold does not work
#4
Luke-ebbis
closed
5 months ago
2
Parse the content of the input to determine exact targets
#3
Luke-ebbis
closed
5 months ago
1
Add the option to get the sequences from a different source than colab fold
#2
Luke-ebbis
opened
6 months ago
0
Allow for sequences to be cut when they are too long
#1
Luke-ebbis
opened
6 months ago
0