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LurLab-UCI / MiniAnalysis

Matlab software for measuring frequency and amplitude of miniature events in patch clamp electrophysiology
GNU General Public License v3.0
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problems #1

Open yuan596 opened 3 years ago

yuan596 commented 3 years ago

Hello！ I have a problem about minianalysis. Which code is to calculate Rise，Decay and so on？

LurLab-UCI commented 3 years ago

Hi,

I am not sure I understand your issue. If you are trying to calculate rise and decay of the output (i.e. the miniature events themselves), you will have to do that post-hoc. This software is only for the detection and extraction of the events, it does not make measurements on them (aside from frequency).

If you are asking how to get rise and decay values, use the cursors to select example events from your trace, add them to the examples then you can grab the estimated rise and decay using the GUI and apply them to a template. The GUI will then search your recording to match this template.

Hope this helps.

yuan596 commented 3 years ago

Hello!    I want to ask which scripts in the left picture can calculate the values in the right?

Thanks.

LurLab-UCI commented 3 years ago

Hi, you can find it in MiniAnalysis.m line 483. Please make sure to cite our paper (Fariborzi et al. 2021 PMC7820135) if you use this open source code.

yuan596 commented 3 years ago

Hi, In addition to these, do you know what methods/codes are available to calculate the peak area, half-width and 10-90rise? thank you !

---Original--- From: @.> Date: Wed, Mar 17, 2021 01:13 AM To: @.>; Cc: @.**@.>; Subject: Re: [gyorgylur/MiniAnalysis] problems (#1)

Hi, you can find it in MiniAnalysis.m line 483. Please make sure to cite our paper (Fariborzi et al. 2021 PMC7820135) if you use this open source code.

— You are receiving this because you authored the thread. Reply to this email directly, view it on GitHub, or unsubscribe.

---Original--- From: @.> Date: Wed, Mar 17, 2021 01:13 AM To: @.>; Cc: @.**@.>; Subject: Re: [gyorgylur/MiniAnalysis] problems (#1)

Hi, you can find it in MiniAnalysis.m line 483. Please make sure to cite our paper (Fariborzi et al. 2021 PMC7820135) if you use this open source code.

— You are receiving this because you authored the thread. Reply to this email directly, view it on GitHub, or unsubscribe.

LurLab-UCI commented 3 years ago

You would have to write those scripts yourself, I'm sure you can find guidance on stack overflow and other forums. I don't have those analyses ready at hand.

yuan596 commented 3 years ago

thank you for your help!