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LuyiTian / FLAMES

Full-length transcriptome splicing and mutation analysis
GNU General Public License v3.0
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Compute resource allocation? #15

Open danledinh opened 2 years ago

danledinh commented 2 years ago

Is there a way to define number of cores, RAM usage, etc. for the pipelines?

LuyiTian commented 2 years ago

sorry it is not suported now. one way to speed up could be split the fastq for cell barcode matching and merge them after alignment to genome.

sonalhenson commented 7 months ago

@LuyiTian , would you recommend this splitting solution for bam files too? I already have barcode called and mapped reads in bam files. Should I split the bam by chromosome and run each separately to speed up the computation?

Thanks.