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LuyiTian / FLAMES

Full-length transcriptome splicing and mutation analysis
GNU General Public License v3.0
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match_cell_barcode - output cell barcode statistics file #38

Closed maegsul closed 1 year ago

maegsul commented 1 year ago

Hi, I am using match_cell_barcode for ONT single cell data. I obtained a "whitelist.csv" and "putative_bc.csv" file from the output of BLAZE, at the same time I also have short-read sequencing data on the same library.

However, I am confused what file should be used for the 2nd argument of match_cell_barcode, that is "output cell barcode statistics file", or as explained in README "a file name/path for the statistics of barcode matching".

Can you please help with understanding this file? How should it look like (which headers?) and how can I get it?

Thanks in advance!

LuyiTian commented 1 year ago

it should be an output file. so you just need to give a file path that the program have write access to.

maegsul commented 1 year ago

Thank you very much, this makes sense! :)