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LuyiTian / scPipe

a pipeline for single cell RNA-seq data analysis
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Data processing for Smart-seq2 data #128

Open arshiyaakeel opened 4 years ago

arshiyaakeel commented 4 years ago

Hello,

I am new in the area of single cell RNA seq data analysis.I have 50 fastq files for a single sample from the Smart-seq2 platform. I would like to generate a count matrix of expression for these files. I did not find any example to process smart-seq2 data from the tutorial

http://bioinf.wehi.edu.au/scPipe/

Is it posible to use scPipe for Smart-seq2?

Thank you very much.

Best regards Arshiya