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LuyiTian / scPipe

a pipeline for single cell RNA-seq data analysis
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scater::calculateQCMetrics is deprepated #136

Open bernt-matthias opened 3 years ago

bernt-matthias commented 3 years ago

With the current scater package the following error appears:

Error: 'calculateQCMetrics' is defunct.
Use 'perCellQCMetrics' instead.

https://github.com/LuyiTian/scPipe/blob/a9948cf4287eae6ac1252b84c3625f16f2cff114/inst/extdata/report_template.Rmd#L196