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Lythimus / PARSES

PARSES: A Pipeline for Analysis of RNA-Sequencing Exogenous Sequences, is a pipeline constructed from existing sequence analysis tools that allows the user to interrogate RNA-Sequencing experiments for possible biological contamination or the presence of exogenous sequences that may shed light on other factors influencing an organism's condition. Built upon Rake, PARSES allows data simple analysis of RNA-Sequencing data in an automated and repeatable fashion. Usability, logging, and versatility are the keynotes of this pipeline.
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MEGAN reads naming #22

Closed Lythimus closed 13 years ago

Lythimus commented 13 years ago

Find a way to programatically name reads extracted from MEGAN with name of original file prepended.

Lythimus commented 13 years ago

Not as pertinent now that kmer optimization files are merged together.

Lythimus commented 13 years ago

Not needed.