Targeted non-human DNA removal

Lythimus / PARSES

PARSES: A Pipeline for Analysis of RNA-Sequencing Exogenous Sequences, is a pipeline constructed from existing sequence analysis tools that allows the user to interrogate RNA-Sequencing experiments for possible biological contamination or the presence of exogenous sequences that may shed light on other factors influencing an organism's condition. Built upon Rake, PARSES allows data simple analysis of RNA-Sequencing data in an automated and repeatable fashion. Usability, logging, and versatility are the keynotes of this pipeline.

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Targeted non-human DNA removal #28

Closed Lythimus closed 13 years ago

Lythimus commented 13 years ago

Ability to install and index a database provided and remove DNA from dataset of a specific organism in addition to human.

Lythimus commented 13 years ago

v0.43 Support for non-human host organism. Fixed parallel BLAST determination error. Fixed index-building error. Closed by 5806dbc2d5ee2d34ba36009d5899270c97bf90a7.