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Lythimus / PARSES

PARSES: A Pipeline for Analysis of RNA-Sequencing Exogenous Sequences, is a pipeline constructed from existing sequence analysis tools that allows the user to interrogate RNA-Sequencing experiments for possible biological contamination or the presence of exogenous sequences that may shed light on other factors influencing an organism's condition. Built upon Rake, PARSES allows data simple analysis of RNA-Sequencing data in an automated and repeatable fashion. Usability, logging, and versatility are the keynotes of this pipeline.
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MEGAN 4 support #29

Closed Lythimus closed 13 years ago

Lythimus commented 13 years ago

Command-line interaction is completely changing in MEGAN 4.

Lythimus commented 13 years ago

Added some support in v0.36 but has yet to be tested and not fully implemented.

Lythimus commented 13 years ago

v0.42 Fixed MEGAN parameters. Fixed MEGAN version detection. Closed by 27c1aef2e1c749f9fe28b1e2dc222663232586d3.