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Lythimus / PARSES

PARSES: A Pipeline for Analysis of RNA-Sequencing Exogenous Sequences, is a pipeline constructed from existing sequence analysis tools that allows the user to interrogate RNA-Sequencing experiments for possible biological contamination or the presence of exogenous sequences that may shed light on other factors influencing an organism's condition. Built upon Rake, PARSES allows data simple analysis of RNA-Sequencing data in an automated and repeatable fashion. Usability, logging, and versatility are the keynotes of this pipeline.
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Proper logging #3

Closed Lythimus closed 13 years ago

Lythimus commented 13 years ago

Update logging process to perform everything commented in Rake file.

Lythimus commented 13 years ago

v0.33. Removed FASTA splitting. BLAST+ using standard format now. Updated logging. Closed by 18877c620394c0beda2771e068fadaa76877f9f5. Logging is not only more robust and correct, but is now linked directly with all shell commands executed. Logging information may be added to reports at some point. Provide useful information about data.