search

Lythimus / PARSES

PARSES: A Pipeline for Analysis of RNA-Sequencing Exogenous Sequences, is a pipeline constructed from existing sequence analysis tools that allows the user to interrogate RNA-Sequencing experiments for possible biological contamination or the presence of exogenous sequences that may shed light on other factors influencing an organism's condition. Built upon Rake, PARSES allows data simple analysis of RNA-Sequencing data in an automated and repeatable fashion. Usability, logging, and versatility are the keynotes of this pipeline.
6 stars 1 forks source link

BLASTTAB integration #41

Closed Lythimus closed 13 years ago

Lythimus commented 13 years ago

Switch to using BLASTTAB + taxon id injection for performance reasons. Including incorporating No Hits into results.

Lythimus commented 13 years ago

v0.37 BLASTTAB new used instead of Pairwise for efficiency. Timing information logged for all commands. Conditional dust on BLAST. GI to TaxID Nucleotide database installation. Closed by 3441eef9fef85ca5c61c909d5e70aea6c8d83515. Closed by 3441eef9fef85ca5c61c909d5e70aea6c8d83515.