leeh43
commented
1 year ago Hi, I just fix the key mismatch in test_seg.py. I also have tried with my latest trained model and it works well now. Please try with the latest version test_seg.py.
Fyi: I will also upload the latest trained model and feel free to have a try on that.
i don't know how to deal with it /home/wf/anaconda3/envs/nnFormer0/lib/python3.8/site-packages/torch/functional.py:445: UserWarning: torch.meshgrid: in an upcoming release, it will be required to pass the indexing argument. (Triggered internally at ../aten/src/ATen/native/TensorShape.cpp:2157.) return _VF.meshgrid(tensors, **kwargs) # type: ignore[attr-defined] Traceback (most recent call last): File "/home/wf/anaconda3/envs/nnFormer0/lib/python3.8/site-packages/monai/transforms/transform.py", line 89, in apply_transform return _apply_transform(transform, data, unpack_items) File "/home/wf/anaconda3/envs/nnFormer0/lib/python3.8/site-packages/monai/transforms/transform.py", line 53, in _apply_transform return transform(parameters) File "/home/wf/anaconda3/envs/nnFormer0/lib/python3.8/site-packages/monai/transforms/io/dictionary.py", line 130, in call for key, meta_key, meta_key_postfix in self.key_iterator(d, self.meta_keys, self.meta_key_postfix): File "/home/wf/anaconda3/envs/nnFormer0/lib/python3.8/site-packages/monai/transforms/transform.py", line 370, in key_iterator raise KeyError( KeyError: 'Key
imageof transformLoadImagedwas missing in the data and allow_missing_keys==False.'The above exception was the direct cause of the following exception:
Traceback (most recent call last): File "/home/wf/anaconda3/envs/nnFormer0/lib/python3.8/site-packages/monai/transforms/transform.py", line 89, in apply_transform return _apply_transform(transform, data, unpack_items) File "/home/wf/anaconda3/envs/nnFormer0/lib/python3.8/site-packages/monai/transforms/transform.py", line 53, in _applytransform return transform(parameters) File "/home/wf/anaconda3/envs/nnFormer0/lib/python3.8/site-packages/monai/transforms/compose.py", line 173, in call input = apply_transform(transform, input, self.map_items, self.unpack_items, self.log_stats) File "/home/wf/anaconda3/envs/nnFormer0/lib/python3.8/site-packages/monai/transforms/transform.py", line 113, in apply_transform raise RuntimeError(f"applying transform {transform}") from e RuntimeError: applying transform <monai.transforms.io.dictionary.LoadImaged object at 0x7f95514f6130>
The above exception was the direct cause of the following exception:
Traceback (most recent call last): File "/home/wf/yf/3DUX-Net-main/test_seg.py", line 102, in
for i, test_data in enumerate(test_loader):
File "/home/wf/anaconda3/envs/nnFormer0/lib/python3.8/site-packages/torch/utils/data/dataloader.py", line 521, in next
data = self._next_data()
File "/home/wf/anaconda3/envs/nnFormer0/lib/python3.8/site-packages/torch/utils/data/dataloader.py", line 561, in _next_data
data = self._dataset_fetcher.fetch(index) # may raise StopIteration
File "/home/wf/anaconda3/envs/nnFormer0/lib/python3.8/site-packages/torch/utils/data/_utils/fetch.py", line 49, in fetch
data = [self.dataset[idx] for idx in possibly_batched_index]
File "/home/wf/anaconda3/envs/nnFormer0/lib/python3.8/site-packages/torch/utils/data/_utils/fetch.py", line 49, in
data = [self.dataset[idx] for idx in possibly_batched_index]
File "/home/wf/anaconda3/envs/nnFormer0/lib/python3.8/site-packages/monai/data/dataset.py", line 97, in getitem
return self._transform(index)
File "/home/wf/anaconda3/envs/nnFormer0/lib/python3.8/site-packages/monai/data/dataset.py", line 792, in _transform
return super().transform(index)
File "/home/wf/anaconda3/envs/nnFormer0/lib/python3.8/site-packages/monai/data/dataset.py", line 83, in _transform
return apply_transform(self.transform, data_i) if self.transform is not None else data_i
File "/home/wf/anaconda3/envs/nnFormer0/lib/python3.8/site-packages/monai/transforms/transform.py", line 113, in apply_transform
raise RuntimeError(f"applying transform {transform}") from e
RuntimeError: applying transform <monai.transforms.compose.Compose object at 0x7f95514f66d0>
Process finished with exit code 1