Fails to run inferences (predictions) for five folds

[kyokodayo]

I am a newbie and would appreciate any insights. I managed to install Docker and start running the command below.

sudo docker run --rm \ -v $(pwd)/INPUTS/:/INPUTS/ \ -v $(pwd)/OUTPUTS:/OUTPUTS/ \ -v $(pwd)/license.txt:/extra/freesurfer/license.txt \ --user $(id -u):$(id -g) \

It runs up until the inferences for five folds. Then I get the error performing inferences as below. The error is the same for all FOLDs.

Performing inference on FOLD: 1 /extra/pipeline.sh: line 42: 1610 Killed python3.6 /extra/inference.py /OUTPUTS/T1_norm_lin_atlas_2_5.nii.gz /OUTPUTS/b0_d_lin_atlas_2_5.nii.gz /OUTPUTS/b0_u_lin_atlas_2_5FOLD"$i".nii.gz /extra/dual_channel_unet/numfold"$i"_totalfolds"$NUM_FOLDS"_seed_1_num_epochs_100_lr_0.0001betas(0.9\,\ 0.999)_weight_decay_1e-05_numepoch*.pth

I don't know if I'm missing something obvious.. Please help. Thank you!!

[schillkg]

This is just a simple memory issue. Increase your RAM (we recommend >12Gb, but some systems require >16) and you will successfully run the pipeline.

[kyokodayo]

It's running! Thank you so much!!