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MASILab / Synb0-DISCO

Distortion correction of diffusion weighted MRI without reverse phase-encoding scans or field-maps
https://my.vanderbilt.edu/masi
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Problems encounter on Docker #5

Closed oscarwongwh closed 2 years ago

oscarwongwh commented 4 years ago

Hi there, I have installed the app on docker and was trying to run it on a subject. However I got stuck repeated on this place where the ANTs script would not work "/extra/ANTS/ANTs/Scripts/antsRegistrationSyNQuick.sh: line 606: 1218 Killed $COMMAND" Can anyone give me some advice on how to solve this problem? Many thanks

baxpr commented 4 years ago

@oscarwongwh I'm not the expert on this particular container, but when I've seen similar errors in the past it's been because I needed to expand some memory limits given to Docker.

ahilderley commented 2 years ago

@oscarwongwh were you able to resolve this? I'm having the same issue.

schillkg commented 2 years ago

This is almost certainly a memory issue. Especially for Mac users, Docker defaults allows only 2gb of RAM and 2 cores - we suggest giving Docker access to >8Gb of RAM.