(Under construction) Neuropixel Toolkit is a set of unified Matlab tools for manipulating Neuropixel and Kilosort datasets
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Complete one concrete implementation of the Neuropixels analysis pipeline, including Kilosort integration and most pipeline stages (concatenation, time reference, Kilosort 2.5 bridging, PSTH, noise templates) #2
Invoke and/or adapt equivalent functionality from the Neuropixel Utils package
Re-implement Python code in MATLAB
As discussed at the kickoff meeting, the goal is a minimum meaningful use case through the pipeline. As such, the following can be considered optional stages & steps for the minimal concrete implementation:
PSTH events
QC metrics
Manual curation
intermediate visualization (e.g. with the phy package)
This will be a concrete realization of the more abstract pipeline established in Issue #1
For each stage of the pipeline not handled by Kilosort, there will be a few options for implementation:
As discussed at the kickoff meeting, the goal is a minimum meaningful use case through the pipeline. As such, the following can be considered optional stages & steps for the minimal concrete implementation: