Slow speeds on GPUs with DNAscent detect on v4.0.1

MBoemo / DNAscent

Software for detecting regions of BrdU and EdU incorporation in Oxford Nanopore reads.

https://www.boemogroup.org/

GNU General Public License v3.0

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Slow speeds on GPUs with DNAscent detect on v4.0.1 #44

Closed MBoemo closed 3 months ago

MBoemo commented 8 months ago

We're aware that some users are experiencing speed issues on certain GPUs when running DNAscent detect in v4.0.1. We're working on a fix, but if you're also experiencing this issue, it would help us out if you can post what GPU you're using below.

OsredekIvana commented 7 months ago

Hi Michael! I am experiencing this issue, too. I am using the NVIDIA Tesla series, but we also have other options available, such as GeForce RTX 3090 and some AMD GPUs. Could you maybe share which GPU works better than the other one in the case of DNAScent? Thank you!

MBoemo commented 3 months ago

Resolved in commit https://github.com/MBoemo/DNAscent/commit/884bef1a73229abbe37594975ca4dee932244c0e.