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MBoemo / DNAscent

Software for detecting regions of BrdU and EdU incorporation in Oxford Nanopore reads.
https://www.boemogroup.org/
GNU General Public License v3.0
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Output file for index command #5

Closed dariober closed 4 years ago

dariober commented 4 years ago

This is a small thing... It seems the subprogram DNAscent index (commit 39fd07c) is hard-coded to output to file index.dnascent which is a bit awkward if you have multiple samples.

Would it be possible to add a --output option instead? Or just write to stdout?

Thanks! Dario

MBoemo commented 4 years ago

Yes I agree that could be inconvenient for some users. I'm about to roll out a fairly big update in the next week or two, so I'll look at changing this as part of the update.