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MBoemo / DNAscent

Software for detecting regions of BrdU and EdU incorporation in Oxford Nanopore reads.
https://www.boemogroup.org/
GNU General Public License v3.0
26 stars 13 forks source link

[Discussion] DNAscent as Conda Package and Hosting #50

Closed ThDef closed 3 months ago

ThDef commented 6 months ago

Hello,

I am currently designing a small pipeline for Brdu detection for my team and as such, I was wondering if you have any plan to host your tool as a conda package on any conda channel to facilitate installation and reproductibility ? Having the option to easily set up a virtual environment with all the tools required at a specific version would be a big + for my team of biologists who are not really used to do any bioinformatics work.

Thanks for your time ! ThDef

HrishiDhondge commented 4 months ago

This can also help to address the issues raised in #51

MBoemo commented 4 months ago

@HrishiDhondge agreed - image is made, just testing over the next day or two and then I'll post it.

HrishiDhondge commented 4 months ago

@MBoemo, Thanks for quick response. I would be happy to test it (on different platform) in case you need a few more hands. 🙂

MBoemo commented 3 months ago

Here's a singularity image of our latest release: https://cloud.sylabs.io/library/mboemo/dnascent/dnascent DNAscent documentation has been updated accordingly. Hope that helps!