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MBoemo / DNAscent

Software for detecting regions of BrdU and EdU incorporation in Oxford Nanopore reads.
https://www.boemogroup.org/
GNU General Public License v3.0
26 stars 13 forks source link

Make error: missing library #65

Closed ShephC closed 1 month ago

ShephC commented 1 month ago

Trying to get 4.0.3 up and running and am encountering issues compiling. I'm attempting to make in a miniconda environment as a workaround for not having admin privileges. I've also tried building pod5 from the source with no luck. Any clue why? Here's the last few lines:

/usr/bin/ld: cannot find -lpod5_format /usr/bin/ld: /u/cshepherd/DNAscent/pod5-file-format/build/third_party/libs/libjemalloc_pic.a(jemalloc.pic.o): unable to initialize decompress status for section .debug_info /usr/bin/ld: /u/cshepherd/DNAscent/pod5-file-format/build/third_party/libs/libjemalloc_pic.a(jemalloc.pic.o): unable to initialize decompress status for section .debug_info /usr/bin/ld: /u/cshepherd/DNAscent/pod5-file-format/build/third_party/libs/libjemalloc_pic.a(jemalloc.pic.o): unable to initialize decompress status for section .debug_info /usr/bin/ld: /u/cshepherd/DNAscent/pod5-file-format/build/third_party/libs/libjemalloc_pic.a(jemalloc.pic.o): unable to initialize decompress status for section .debug_info /u/cshepherd/DNAscent/pod5-file-format/build/third_party/libs/libjemalloc_pic.a: error adding symbols: File format not recognized collect2: error: ld returned 1 exit status make: *** [Makefile:127: bin/DNAscent] Error 1

Thanks!

MBoemo commented 1 month ago

Looks like pod5 didn't build correctly - suggest going back through the error messages to figure out why or just use the singularity image that we provide.