It's not clear whether you have to do Burn Bootloader to change the fuses for any of the options, such as the clock frequency.
The only case where the documentation explicitly says you have to do Burn Bootloader is for the EEPROM option, so can I assume all the other options don't need it?
Sorry for the late reply. You don't need to click "Burn Bootloader" as long as you're using a UPDI programmer. I'll remove the part in the README that states this is necessary for the EEPROM option.
It's not clear whether you have to do Burn Bootloader to change the fuses for any of the options, such as the clock frequency.
The only case where the documentation explicitly says you have to do Burn Bootloader is for the EEPROM option, so can I assume all the other options don't need it?