Galaxy Advanced Builder: Need improved error message for errors regarding creating heat map with covariates made using Row or Column Cluster Covariate Bar options. #5
If error occurs during cuttree, better error message should be provided.
Although people should do something so dumb, if you pick a number of clusters greater than the number of elements in the matrix, (In this case I used a 4x4 matrix and set the clusters to 10) the provided message is:
The "ward" method has been renamed to "ward.D"; note new "ward.D2" [1] "Writing cut file /galaxy-central/tool-data//1911262901/ROfile.txt.cut" Error in cutree(uDend, cutNum) : elements of 'k' must be between 1 and 4 Calls: performDataOrdering -> writeHCC
Originally Pivotal Tracker issue: https://www.pivotaltracker.com/story/show/169980583 bug entered by James M. Melott on 11/26/2019
If error occurs during cuttree, better error message should be provided. Although people should do something so dumb, if you pick a number of clusters greater than the number of elements in the matrix, (In this case I used a 4x4 matrix and set the clusters to 10) the provided message is: The "ward" method has been renamed to "ward.D"; note new "ward.D2" [1] "Writing cut file /galaxy-central/tool-data//1911262901/ROfile.txt.cut" Error in cutree(uDend, cutNum) : elements of 'k' must be between 1 and 4 Calls: performDataOrdering -> writeHCC