Open felipeZ opened 6 years ago
Good idea, and go ahead, but keep in mind that secondaryFiles is also a Cerise issue, it needs to know (how) to stage them. So just swapping in cwltool won't fully resolve that issue. I've made https://github.com/MD-Studio/cerise/issues/63 for the Cerise side of this.
Thanks for the clarification! :+1:
Meanwhile I will play with cwltools
.
as mention in the cerise specialization documentation,
cerise-client
uses cwltiny as default cwl interpreter but it would be great if we can use some features of CWL like secondaryFiles that are currently not supported by cwltiny.