Add in end-to-end test for circleci

MDU-PHL / bohra

A pipeline for bioinformatics analysis of bacterial genomes

GNU General Public License v3.0

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Closed kristyhoran closed 1 year ago

kristyhoran commented 5 years ago

handful of isolates that we map to a reference and extract reads aligning to a small 5kb region.

tseemann commented 5 years ago

Ideally want a small 50-100kbp "genome" with AMR genes and MLST genes.