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MDU-PHL / bohra

A pipeline for bioinformatics analysis of bacterial genomes
GNU General Public License v3.0
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"altair" Python package missing from bohra conda recipe ? #71

Open tetedange13 opened 1 year ago

tetedange13 commented 1 year ago

Hi,
First, thanks for developping bohra !

Context

Version of bohra : 2.3.2

I installed bohra through conda and ran bohra init

But then running bohra run --pipeline preview, I encountered a import module error with altair package, at final "compile" step https://github.com/MDU-PHL/bohra/blob/5ff3a46782fc338a6205b8f388d4922cdec78a60/bohra/modules/collation/bin/compile.py#L3

Steps to reproduce

conda create -n bohra -c conda-forge -c bioconda bohra
conda activate bohra
pip freeze | grep -i altair
# --> Nothing found


Thanks for your help ! Kind regards, Felix.

tseemann commented 3 months ago

@kristyhoran is this still relevant for current version?